It is not the case, technically.From what I understand, some of the Rafale F4.2 upgrades cannot be applied to aircraft that are older than F3R, so everything from F1 to F3.4 will require their own upgrade path, hence my point being they are old designs, while F3R and F4.2 will be built to newer standards.
But it will be too costly to upgrade older Rafale to F4.2 so at least for France it will not be the case (and it is probably one reason explaining why we selled 12 old Rafale to Greece and may be 12 more to Croatia...).
Planes built before the Qatar and Indian ones (so Egypt and Frances ones so far) will practically be limited to the lower ambitious F4.1